NetBSD Problem Report #49079

From www@NetBSD.org  Wed Aug  6 15:19:26 2014
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	by mollari.NetBSD.org (Postfix) with ESMTPS id B3A7CA9757
	for <gnats-bugs@gnats.NetBSD.org>; Wed,  6 Aug 2014 15:19:26 +0000 (UTC)
Message-Id: <20140806151925.488BCA9842@mollari.NetBSD.org>
Date: Wed,  6 Aug 2014 15:19:25 +0000 (UTC)
From: thomas.orgis@uni-hamburg.de
Reply-To: thomas.orgis@uni-hamburg.de
To: gnats-bugs@NetBSD.org
Subject: devel/gobject-introspection needs shoehorning of path to separate pkgsrc install
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>Number:         49079
>Category:       pkg
>Synopsis:       devel/gobject-introspection needs shoehorning of path to separate pkgsrc install
>Confidential:   no
>Severity:       serious
>Priority:       low
>Responsible:    pkg-manager
>State:          open
>Class:          sw-bug
>Submitter-Id:   net
>Arrival-Date:   Wed Aug 06 15:20:00 +0000 2014
>Last-Modified:  Sun Apr 29 08:17:34 +0000 2018
>Originator:     Thomas Orgis
>Release:        pkgsrc-2014Q2
>Organization:
Universität Hamburg
>Environment:
Linux host 3.0.93-0.8-default #1 SMP Tue Aug 27 08:44:18 UTC 2013 (70ed288) x86_64 x86_64 x86_64 GNU/Linux

>Description:
I install pkgsrc in a separate location to freshen up the software environemnt in a SuSE Linux Enterprise Server 11.3 setup.

One package getting into an issue with old versions of things in /usr is devel/gobject-introspection. It finds 'gir' files p.ex. for old system pango in /usr, while it should use the fresh one installed into /some/prefix/pkgsrc/.

This leads to build failures of various software in the stack.
>How-To-Repeat:
Have a rusty base system with existing .gir files for gobject-introspection and install pkgsrc into a separate prefix. Any build that uses g-ir-scanner or g-ir-compiler possibly finds an outdated file and fails, although up-to-date files are installed in pkgsrc prefix. I'll include a crude patch that solves the problem for me.

PS: I have another hack in buildlink3 in plac that prevents system libs overriding pkgsrc ones (disabling BUILDLINK_LIBDIRS at a certain point). This should be independent from this issue though. All in all, the case with possibly present old versions in the base system is not the everyday one, I presume.
>Fix:
Index: devel/gobject-introspection/Makefile
===================================================================
RCS file: /cvsroot/pkgsrc/devel/gobject-introspection/Makefile,v
retrieving revision 1.40
diff -r1.40 Makefile
49a50,61
> # Enforce pkgsrc install of gir stuff to be first in search path.
> # I am assuming that we should not encode $DESTDIR in the installed
> # wrapper script. -- ThOr
> post-install:
>       ${MV} ${DESTDIR}${PREFIX}/bin/g-ir-scanner ${DESTDIR}${PREFIX}/bin/g-ir-scanner.plain
>       printf "#!/bin/sh\nexec \$$0.plain --add-include-path=${PREFIX}/share/gir-1.0 \"\$$@\"\n" > ${DESTDIR}${PREFIX}/bin/g-ir-scanner
>       chmod +x ${DESTDIR}${PREFIX}/bin/g-ir-scanner
>       ${MV} ${DESTDIR}${PREFIX}/bin/g-ir-compiler ${DESTDIR}${PREFIX}/bin/g-ir-compiler.plain
>       printf "#!/bin/sh\nexec \$$0.plain --includedir=${PREFIX}/share/gir-1.0 \"\$$@\"\n" > ${DESTDIR}${PREFIX}/bin/g-ir-compiler
>       chmod +x ${DESTDIR}${PREFIX}/bin/g-ir-compiler
> 
> 
Index: devel/gobject-introspection/PLIST
===================================================================
RCS file: /cvsroot/pkgsrc/devel/gobject-introspection/PLIST,v
retrieving revision 1.6
diff -r1.6 PLIST
3a4
> bin/g-ir-compiler.plain
5a7
> bin/g-ir-scanner.plain

>Release-Note:

>Audit-Trail:
From: Joerg Sonnenberger <joerg@britannica.bec.de>
To: gnats-bugs@NetBSD.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of path
 to separate pkgsrc install
Date: Wed, 17 Sep 2014 11:33:38 +0200

 On Wed, Aug 06, 2014 at 03:20:00PM +0000, thomas.orgis@uni-hamburg.de wrote:
 > Index: devel/gobject-introspection/Makefile
 > ===================================================================
 > RCS file: /cvsroot/pkgsrc/devel/gobject-introspection/Makefile,v
 > retrieving revision 1.40
 > diff -r1.40 Makefile
 > 49a50,61
 > > # Enforce pkgsrc install of gir stuff to be first in search path.
 > > # I am assuming that we should not encode $DESTDIR in the installed
 > > # wrapper script. -- ThOr
 > > post-install:
 > >       ${MV} ${DESTDIR}${PREFIX}/bin/g-ir-scanner ${DESTDIR}${PREFIX}/bin/g-ir-scanner.plain
 > >       printf "#!/bin/sh\nexec \$$0.plain --add-include-path=${PREFIX}/share/gir-1.0 \"\$$@\"\n" > ${DESTDIR}${PREFIX}/bin/g-ir-scanner
 > >       chmod +x ${DESTDIR}${PREFIX}/bin/g-ir-scanner
 > >       ${MV} ${DESTDIR}${PREFIX}/bin/g-ir-compiler ${DESTDIR}${PREFIX}/bin/g-ir-compiler.plain
 > >       printf "#!/bin/sh\nexec \$$0.plain --includedir=${PREFIX}/share/gir-1.0 \"\$$@\"\n" > ${DESTDIR}${PREFIX}/bin/g-ir-compiler
 > >       chmod +x ${DESTDIR}${PREFIX}/bin/g-ir-compiler
 > > 
 > > 
 > Index: devel/gobject-introspection/PLIST
 > ===================================================================
 > RCS file: /cvsroot/pkgsrc/devel/gobject-introspection/PLIST,v
 > retrieving revision 1.6
 > diff -r1.6 PLIST
 > 3a4
 > > bin/g-ir-compiler.plain
 > 5a7
 > > bin/g-ir-scanner.plain
 > 

 Please use diff -u.

 Joerg

From: Thomas Orgis <thomas.orgis@uni-hamburg.de>
To: gnats-bugs@NetBSD.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of
 path to separate pkgsrc install
Date: Tue, 23 Sep 2014 10:07:46 +0200

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 Am Wed, 17 Sep 2014 09:35:00 +0000 (UTC)
 schrieb Joerg Sonnenberger <joerg@britannica.bec.de>:=20

 >  Please use diff -u.

 Better?

 --=20
 Dr. Thomas Orgis
 Universit=C3=A4t Hamburg
 RRZ / Zentrale Dienste / HPC
 Schl=C3=BCterstr. 70
 20146 Hamburg
 Tel.: 040/42838 8826
 Fax: 040/428 38 6270

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 Index: devel/gobject-introspection/PLIST
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 --- devel/gobject-introspection/PLIST
 +++ devel/gobject-introspection/PLIST
 @@ -1,8 +1,10 @@
  @comment $NetBSD: PLIST,v 1.6 2013/12/08 13:28:27 prlw1 Exp $
  bin/g-ir-annotation-tool
  bin/g-ir-compiler
 +bin/g-ir-compiler.plain
  bin/g-ir-generate
  bin/g-ir-scanner
 +bin/g-ir-scanner.plain
  include/gobject-introspection-1.0/giarginfo.h
  include/gobject-introspection-1.0/gibaseinfo.h
  include/gobject-introspection-1.0/gicallableinfo.h
 Index: devel/gobject-introspection/Makefile
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 --- devel/gobject-introspection/Makefile	(Revision 4)
 +++ devel/gobject-introspection/Makefile	(Revision 5)
 @@ -47,6 +47,18 @@
  #.include "../../graphics/cairo-gobject/buildlink3.mk"
  #TEST_TARGET=3D	check
 =20
 +# Enforce pkgsrc install of gir stuff to be first in search path.
 +# I am assuming that we should not encode $DESTDIR in the installed
 +# wrapper script. -- ThOr
 +post-install:
 +	${MV} ${DESTDIR}${PREFIX}/bin/g-ir-scanner ${DESTDIR}${PREFIX}/bin/g-ir-s=
 canner.plain
 +	printf "#!/bin/sh\nexec \$$0.plain --add-include-path=3D${PREFIX}/share/g=
 ir-1.0 \"\$$@\"\n" > ${DESTDIR}${PREFIX}/bin/g-ir-scanner
 +	chmod +x ${DESTDIR}${PREFIX}/bin/g-ir-scanner
 +	${MV} ${DESTDIR}${PREFIX}/bin/g-ir-compiler ${DESTDIR}${PREFIX}/bin/g-ir-=
 compiler.plain
 +	printf "#!/bin/sh\nexec \$$0.plain --includedir=3D${PREFIX}/share/gir-1.0=
  \"\$$@\"\n" > ${DESTDIR}${PREFIX}/bin/g-ir-compiler
 +	chmod +x ${DESTDIR}${PREFIX}/bin/g-ir-compiler
 +
 +
  BUILDLINK_API_DEPENDS.glib2+=3D glib2>=3D2.36.0
  .include "../../devel/glib2/buildlink3.mk"
  BUILDLINK_API_DEPENDS.libffi+=3D libffi>=3D3.0.0

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 --Sig_/.T5PAeZIYMG5phZAa/K7RAR--

From: "OBATA Akio" <obata@lins.jp>
To: gnats-bugs@netbsd.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of path
 to separate pkgsrc install
Date: Tue, 23 Sep 2014 20:39:30 +0900

 Do you have XDG_DATA_DIRS environment variable containing /usr/share?

From: Thomas Orgis <thomas.orgis@uni-hamburg.de>
To: gnats-bugs@NetBSD.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of
 path to separate pkgsrc install
Date: Tue, 23 Sep 2014 22:39:25 +0200

 --Sig_/iHPT9sJM/7SwFj/d1KQohzi
 Content-Type: text/plain; charset=UTF-8
 Content-Transfer-Encoding: quoted-printable

 Am Tue, 23 Sep 2014 11:40:01 +0000 (UTC)
 schrieb "OBATA Akio" <obata@lins.jp>:=20

 >  Do you have XDG_DATA_DIRS environment variable containing /usr/share?

 Hm, yes. This is the default in a login shell on the SLES install.

 XDG_CONFIG_DIRS=3D/etc/xdg
 XDG_DATA_DIRS=3D/usr/share:/etc/opt/kde3/share:/opt/kde3/share

 I didn't think of that. So, should one manipulate these variables
 before trying to build gtk stuff from pkgsrc? This is probably just
 more of the fun stuff trying to isolate pkgsrc from outside
 influence ...


 Alrighty then,

 Thomas

 --=20
 Dr. Thomas Orgis
 Universit=C3=A4t Hamburg
 RRZ / Zentrale Dienste / HPC
 Schl=C3=BCterstr. 70
 20146 Hamburg
 Tel.: 040/42838 8826
 Fax: 040/428 38 6270

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 --Sig_/iHPT9sJM/7SwFj/d1KQohzi--

From: "OBATA Akio" <obata@lins.jp>
To: gnats-bugs@netbsd.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of path
 to separate pkgsrc install
Date: Wed, 24 Sep 2014 10:36:52 +0900

 On Wed, 24 Sep 2014 05:40:01 +0900, Thomas Orgis <thomas.orgis@uni-hamburg.de> wrote:

 >  >  Do you have XDG_DATA_DIRS environment variable containing /usr/share?
 > Hm, yes. This is the default in a login shell on the SLES install.
 > XDG_CONFIG_DIRS=/etc/xdg
 >  XDG_DATA_DIRS=/usr/share:/etc/opt/kde3/share:/opt/kde3/share
 > I didn't think of that. So, should one manipulate these variables
 >  before trying to build gtk stuff from pkgsrc? This is probably just
 >  more of the fun stuff trying to isolate pkgsrc from outside
 >  influence ...

 Such variables will be preferred over default settings and affect to
 not only build but also runtime.  So you should set proper variable.

 -- 
 OBATA Akio / obata@lins.jp

From: Thomas Orgis <thomas.orgis@uni-hamburg.de>
To: gnats-bugs@NetBSD.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of
 path to separate pkgsrc install
Date: Thu, 25 Sep 2014 10:19:32 +0200

 --Sig_/zO7dn2BZeaBS+I82PeOv5KQ
 Content-Type: text/plain; charset=ISO-8859-1
 Content-Transfer-Encoding: quoted-printable

 Am Wed, 24 Sep 2014 01:40:01 +0000 (UTC)
 schrieb "OBATA Akio" <obata@lins.jp>:

 >  Such variables will be preferred over default settings and affect to
 >  not only build but also runtime.  So you should set proper variable.

 If this is considered works-as-designed due to the environment, it
 would be nice to point out that caveat in the documentation for pkgsrc
 on systems that might overlap with it in the base install (so,
 basically, all non-BSD). A section collecting usual variables that may
 conflict with pkgsrc in unusual ways. At least I wouldn't think of an
 install of gtk/glib/whatnot picking up object descriptions from some
 random place and not where the stuff matching the used library
 containing said objects is installed. Of course you cannot blame pkgsrc
 for weird behaviour of upstream stuff.


 Alrighty then,

 Thomas

 --=20
 Dr. Thomas Orgis
 Universit=E4t Hamburg
 RRZ / Zentrale Dienste / HPC
 Schl=FCterstr. 70
 20146 Hamburg
 Tel.: 040/42838 8826
 Fax: 040/428 38 6270

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 --Sig_/zO7dn2BZeaBS+I82PeOv5KQ--

From: "OBATA Akio" <obata@lins.jp>
To: gnats-bugs@netbsd.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of path
 to separate pkgsrc install
Date: Fri, 26 Sep 2014 10:30:25 +0900

 Could you asked to SLES support instead?

 It is not a pkgsrc specific problem, and I don't know the solution.

 If such XDG_DATA_DIRS setting is really required for SLES,
    1. put ${LOCALBASE}/share on top of XDG_DATA_DIRS, and
       SLES native applications may not work as expected.
    2. put ${LOCALBASE}/share on last of XDG_DATA_DIRS, and
       applications installed into ${LOCALBASE} may not work as expected.

From: Thomas Orgis <thomas.orgis@uni-hamburg.de>
To: gnats-bugs@NetBSD.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of
 path to separate pkgsrc install
Date: Fri, 26 Sep 2014 10:19:46 +0200

 --Sig_/6xalqiG_=eC3JkS5YG_wOmf
 Content-Type: text/plain; charset=UTF-8
 Content-Transfer-Encoding: quoted-printable

 Am Fri, 26 Sep 2014 01:35:01 +0000 (UTC)
 schrieb "OBATA Akio" <obata@lins.jp>:=20

 > The following reply was made to PR pkg/49079; it has been noted by GNATS.
 >=20
 > From: "OBATA Akio" <obata@lins.jp>
 > To: gnats-bugs@netbsd.org
 > Cc:=20
 > Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of =
 path
 >  to separate pkgsrc install
 > Date: Fri, 26 Sep 2014 10:30:25 +0900
 >=20
 >  Could you asked to SLES support instead?

 Honenstly, I cannot imagine what they could say on the matter apart
 from "Use our package repositories, and, anyway, please update your
 installation.". I do guess that the solution has to be to put pkgsrc in
 the XDG paths for desktop stuff to be found in general. If there's
 something mixed with base install and pkgsrc, it could get funny.

 I stumbled upon this one:

 	http://mail-index.netbsd.org/pkgsrc-users/2012/06/27/msg016631.html

 and the follow-up

 	http://mail-index.netbsd.org/pkgsrc-users/2012/06/27/msg016632.html


 I wonder what Matthias meant with "A real fix will come soon.";-)

 Oh, and I have to agree with Matthias on "using XDG_DATA_DIRS in any
 build tool is wrong".


 Alrighty then,

 Thomas

 --=20
 Dr. Thomas Orgis
 Universit=C3=A4t Hamburg
 RRZ / Zentrale Dienste / HPC
 Schl=C3=BCterstr. 70
 20146 Hamburg
 Tel.: 040/42838 8826
 Fax: 040/428 38 6270

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 --Sig_/6xalqiG_=eC3JkS5YG_wOmf--

From: "OBATA Akio" <obata@lins.jp>
To: gnats-bugs@netbsd.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of path
 to separate pkgsrc install
Date: Fri, 26 Sep 2014 18:26:02 +0900

 On Fri, 26 Sep 2014 17:25:01 +0900, Thomas Orgis <thomas.orgis@uni-hamburg.de> wrote:

 >  Oh, and I have to agree with Matthias on "using XDG_DATA_DIRS in any
 >  build tool is wrong".

  From XDG Base Directory Specification, it is right behavior to use
 XDG_DATA_DIRS before system default directories.

 -- 
 OBATA Akio / obata@lins.jp

From: Thomas Orgis <thomas.orgis@uni-hamburg.de>
To: gnats-bugs@NetBSD.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of
 path to separate pkgsrc install
Date: Fri, 26 Sep 2014 13:52:22 +0200

 --Sig_/nDoCUY2lbQwLQh19rjH5Tnc
 Content-Type: text/plain; charset=ISO-8859-1
 Content-Transfer-Encoding: quoted-printable

 Am Fri, 26 Sep 2014 09:30:01 +0000 (UTC)
 schrieb "OBATA Akio" <obata@lins.jp>:

 >   From XDG Base Directory Specification, it is right behavior to use
 >  XDG_DATA_DIRS before system default directories.

 The point at hand, as I understood it, is if the XDG specification
 shuild apply to the build process of system infrastructure like that
 gobject stuff. I'm not sure about the scope of this spec.

 I'll see what happens with differing values for these variables. One
 open question for me is what happens if XDG_DATA_DIRS is unset. The
 specification says that then,

 	/usr/local/share/:/usr/share/

 should be used. That clearly also would break pkgsrc (I notice the
 trailing slashes ... what's that about? I copied from the spec.). So,
 is pkgsrc already modifying the specification here to make things work
 in absence of XDG_DATA_DIRS?

 I'm in the process of preparing another pkgsrc build and will try to
 test some cases ...


 Alrighty then,

 Thomas

 --=20
 Dr. Thomas Orgis
 Universit=E4t Hamburg
 RRZ / Zentrale Dienste / HPC
 Schl=FCterstr. 70
 20146 Hamburg
 Tel.: 040/42838 8826
 Fax: 040/428 38 6270

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From: "OBATA Akio" <obata@lins.jp>
To: gnats-bugs@netbsd.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of path
 to separate pkgsrc install
Date: Fri, 26 Sep 2014 21:26:25 +0900

 I once rose head-up about XDG spec violation of pkgsrc, but no feedback.
 So I gave up to find the solution.

 Pkgsrc provides workaround to prevent garbage environment variables
  from affecting to build process.


 PKGSRC_SETENV= ${SETENV} -i

Responsible-Changed-From-To: pkg-manager->drochner
Responsible-Changed-By: bsiegert@NetBSD.org
Responsible-Changed-When: Sat, 04 Jul 2015 11:59:21 +0000
Responsible-Changed-Why:
Matthias, did you ever address
http://mail-index.netbsd.org/pkgsrc-users/2012/06/27/msg016632.html?


From: Patrick Welche <prlw1@cam.ac.uk>
To: gnats-bugs@netbsd.org
Cc: 
Subject: Re: pkg/49079: devel/gobject-introspection needs shoehorning of path
Date: Thu, 24 Aug 2017 17:06:52 +0100

 As obache@ points out, there is an open question on what pkgsrc should do
 about XDG variables.

 He hints at bsd.pkg.mk

 # To sanitise environment set PKGSRC_SETENV=${SETENV} -i
 # This will however cause build failures (e.g. "www/firefox"). Settings
 # like "ALLOW_VULNERABLE_PACKAGES" will also not be correctly passed
 # to dependence builds.
 PKGSRC_SETENV?= ${SETENV}

 at tweaking/removing the XDG variables.

 At the other end of the chain, gobject-introspection contains:

 def get_system_data_dirs():
     '''
     This is a Python reimplemention of `g_get_system_data_dirs()` because we don't want to
     rely on the python-xdg package and we can't depend on GLib via introspection.
     If any changes are made to that function they'll need to be copied here.
     '''
     xdg_data_dirs = [x for x in os.environ.get('XDG_DATA_DIRS', '').split(os.pathsep)]
     if not xdg_data_dirs and os.name != 'nt':
         xdg_data_dirs.append('/usr/local/share')
         xdg_data_dirs.append('/usr/share')

     return xdg_data_dirs

Responsible-Changed-From-To: drochner->packages
Responsible-Changed-By: spz@NetBSD.org
Responsible-Changed-When: Sun, 29 Apr 2018 08:00:37 +0000
Responsible-Changed-Why:
drochner is inactive


Responsible-Changed-From-To: packages->pkg-manager
Responsible-Changed-By: wiz@NetBSD.org
Responsible-Changed-When: Sun, 29 Apr 2018 08:17:34 +0000
Responsible-Changed-Why:
Proper role account



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