NetBSD Problem Report #53425
From gson@gson.org Wed Jul 4 09:47:03 2018
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for <gnats-bugs@gnats.NetBSD.org>; Wed, 4 Jul 2018 09:47:03 +0000 (UTC)
Message-Id: <20180704094656.669AC9896A2@guava.gson.org>
Date: Wed, 4 Jul 2018 12:46:56 +0300 (EEST)
From: gson@gson.org (Andreas Gustafsson)
Reply-To: gson@gson.org (Andreas Gustafsson)
To: gnats-bugs@NetBSD.org
Subject: graphics/py-matplotlib 2.2.2 import fails
X-Send-Pr-Version: 3.95
>Number: 53425
>Category: pkg
>Synopsis: graphics/py-matplotlib 2.2.2 import fails
>Confidential: no
>Severity: serious
>Priority: high
>Responsible: pkg-manager
>State: closed
>Class: sw-bug
>Submitter-Id: net
>Arrival-Date: Wed Jul 04 09:50:00 +0000 2018
>Closed-Date: Sat Sep 22 07:36:16 +0000 2018
>Last-Modified: Sat Sep 22 07:36:16 +0000 2018
>Originator: Andreas Gustafsson
>Release: NetBSD 7.1_STABLE; also -current
>Organization:
>Environment:
System: NetBSD
Architecture: x86_64
Machine: amd64
>Description:
With graphics/py-matplotlib 2.2.2, attempting to import
matplotlib.pyplot fails with the following backtrace:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/pkg/lib/python2.7/site-packages/matplotlib/pyplot.py", line 31, in <module>
import matplotlib.colorbar
File "/usr/pkg/lib/python2.7/site-packages/matplotlib/colorbar.py", line 36, in <module>
import matplotlib.contour as contour
File "/usr/pkg/lib/python2.7/site-packages/matplotlib/contour.py", line 20, in <module>
import matplotlib.font_manager as font_manager
File "/usr/pkg/lib/python2.7/site-packages/matplotlib/font_manager.py", line 1469, in <module>
_rebuild()
File "/usr/pkg/lib/python2.7/site-packages/matplotlib/font_manager.py", line 1450, in _rebuild
fontManager = FontManager()
File "/usr/pkg/lib/python2.7/site-packages/matplotlib/font_manager.py", line 1086, in __init__
self.ttflist = createFontList(self.ttffiles)
File "/usr/pkg/lib/python2.7/site-packages/matplotlib/font_manager.py", line 587, in createFontList
font = ft2font.FT2Font(fpath)
TypeError: First argument must be a path or file object reading bytes
>How-To-Repeat:
Install graphics/py-matplotlib from current pkgsrc and run
/usr/pkg/bin/python2.7 -c 'import matplotlib.pyplot'
>Fix:
>Release-Note:
>Audit-Trail:
From: coypu@sdf.org
To: gnats-bugs@NetBSD.org
Cc:
Subject: Re: pkg/53425: graphics/py-matplotlib 2.2.2 import fails
Date: Wed, 4 Jul 2018 10:47:48 +0000
Well there's your problem, in fc-list:
#ifdef linux
#define HAVE_GETOPT_LONG 1
#endif
and it doesn't have fc-list --format on non-linux.
-f should be equivalent. Should patch it.
From: maya@netbsd.org
To: gnats-bugs@netbsd.org
Cc:
Subject: Re: pkg/53425: graphics/py-matplotlib 2.2.2 import fails
Date: Wed, 4 Jul 2018 11:14:27 +0000
well, there's one of your problems, that isn't sufficient to fix it. But
here is a patch.
--- lib/matplotlib/font_manager.py.orig 2018-03-17 18:03:23.000000000 +0000
+++ lib/matplotlib/font_manager.py
@@ -279,7 +279,7 @@ def _call_fc_list():
'This may take a moment.'))
timer.start()
try:
- out = subprocess.check_output([str('fc-list'), '--format=%{file}\\n'])
+ out = subprocess.check_output([str('fc-list'), '-f %{file}\\n'])
except (OSError, subprocess.CalledProcessError):
return []
finally:
From: "Maya Rashish" <maya@netbsd.org>
To: gnats-bugs@gnats.NetBSD.org
Cc:
Subject: PR/53425 CVS commit: src/external/mit/xorg/bin
Date: Wed, 4 Jul 2018 12:25:49 +0000
Module Name: src
Committed By: maya
Date: Wed Jul 4 12:25:49 UTC 2018
Modified Files:
src/external/mit/xorg/bin/fc-cache: Makefile
src/external/mit/xorg/bin/fc-cat: Makefile
src/external/mit/xorg/bin/fc-list: Makefile
src/external/mit/xorg/bin/fc-match: Makefile
src/external/mit/xorg/bin/fc-pattern: Makefile
src/external/mit/xorg/bin/fc-query: Makefile
src/external/mit/xorg/bin/fc-scan: Makefile
src/external/mit/xorg/bin/fc-validate: Makefile
Log Message:
Claim to have getopt_long.
We do, and packages occasionally expect the long options to exist.
Pointed out while investigating
PR pkg/53425: graphics/py-matplotlib 2.2.2 import fails
(which is not fixed by this commit)
To generate a diff of this commit:
cvs rdiff -u -r1.3 -r1.4 src/external/mit/xorg/bin/fc-cache/Makefile
cvs rdiff -u -r1.2 -r1.3 src/external/mit/xorg/bin/fc-cat/Makefile
cvs rdiff -u -r1.2 -r1.3 src/external/mit/xorg/bin/fc-list/Makefile
cvs rdiff -u -r1.3 -r1.4 src/external/mit/xorg/bin/fc-match/Makefile
cvs rdiff -u -r1.2 -r1.3 src/external/mit/xorg/bin/fc-pattern/Makefile
cvs rdiff -u -r1.3 -r1.4 src/external/mit/xorg/bin/fc-query/Makefile
cvs rdiff -u -r1.2 -r1.3 src/external/mit/xorg/bin/fc-scan/Makefile
cvs rdiff -u -r1.1 -r1.2 src/external/mit/xorg/bin/fc-validate/Makefile
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
From: "Andreas Gustafsson" <gson@netbsd.org>
To: gnats-bugs@gnats.NetBSD.org
Cc:
Subject: PR/53425 CVS commit: pkgsrc/graphics
Date: Wed, 11 Jul 2018 16:19:32 +0000
Module Name: pkgsrc
Committed By: gson
Date: Wed Jul 11 16:19:32 UTC 2018
Modified Files:
pkgsrc/graphics/py-matplotlib: Makefile distinfo
pkgsrc/graphics/py-matplotlib-gtk2: Makefile
pkgsrc/graphics/py-matplotlib-tk: Makefile
Added Files:
pkgsrc/graphics/py-matplotlib/patches: patch-src_file__compat.h
Log Message:
py-matplotlib: fix PR 53425
Don't call fflush() on a read-only file pointer; it is an error on BSD
systems and causes the import of matplotlib.pyplot to fail.
To generate a diff of this commit:
cvs rdiff -u -r1.52 -r1.53 pkgsrc/graphics/py-matplotlib/Makefile
cvs rdiff -u -r1.30 -r1.31 pkgsrc/graphics/py-matplotlib/distinfo
cvs rdiff -u -r1.66 -r1.67 pkgsrc/graphics/py-matplotlib-gtk2/Makefile
cvs rdiff -u -r1.33 -r1.34 pkgsrc/graphics/py-matplotlib-tk/Makefile
cvs rdiff -u -r0 -r1.1 \
pkgsrc/graphics/py-matplotlib/patches/patch-src_file__compat.h
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
From: Andreas Gustafsson <gson@gson.org>
To: gnats-bugs@NetBSD.org
Cc:
Subject: Re: pkg/53425: graphics/py-matplotlib 2.2.2 import fails
Date: Wed, 11 Jul 2018 20:01:31 +0300
Reported upstream as:
https://github.com/matplotlib/matplotlib/issues/1163
--
Andreas Gustafsson, gson@gson.org
State-Changed-From-To: open->closed
State-Changed-By: gson@NetBSD.org
State-Changed-When: Wed, 11 Jul 2018 17:12:04 +0000
State-Changed-Why:
Should work now.
State-Changed-From-To: closed->pending-pullups
State-Changed-By: bsiegert@NetBSD.org
State-Changed-When: Wed, 11 Jul 2018 17:58:34 +0000
State-Changed-Why:
pullup-pkgsrc #5782
From: "S.P.Zeidler" <spz@netbsd.org>
To: gnats-bugs@gnats.NetBSD.org
Cc:
Subject: PR/53425 CVS commit: [pkgsrc-2018Q2] pkgsrc/graphics
Date: Thu, 12 Jul 2018 19:47:38 +0000
Module Name: pkgsrc
Committed By: spz
Date: Thu Jul 12 19:47:38 UTC 2018
Modified Files:
pkgsrc/graphics/py-matplotlib [pkgsrc-2018Q2]: Makefile distinfo
pkgsrc/graphics/py-matplotlib-gtk2 [pkgsrc-2018Q2]: Makefile
pkgsrc/graphics/py-matplotlib-tk [pkgsrc-2018Q2]: Makefile
Added Files:
pkgsrc/graphics/py-matplotlib/patches [pkgsrc-2018Q2]:
patch-src_file__compat.h
Log Message:
Pullup ticket #5782 - requested by bsiegert
graphics/py-matplotlib: functionality patch
graphics/py-matplotlib-gtk2: functionality patch
graphics/py-matplotlib-tk: functionality patch
Revisions pulled up:
- graphics/py-matplotlib-gtk2/Makefile 1.67
- graphics/py-matplotlib-tk/Makefile 1.34
- graphics/py-matplotlib/Makefile 1.53
- graphics/py-matplotlib/distinfo 1.31
- graphics/py-matplotlib/patches/patch-src_file__compat.h 1.1
-------------------------------------------------------------------
Module Name: pkgsrc
Committed By: gson
Date: Wed Jul 11 16:19:32 UTC 2018
Modified Files:
pkgsrc/graphics/py-matplotlib: Makefile distinfo
pkgsrc/graphics/py-matplotlib-gtk2: Makefile
pkgsrc/graphics/py-matplotlib-tk: Makefile
Added Files:
pkgsrc/graphics/py-matplotlib/patches: patch-src_file__compat.h
Log Message:
py-matplotlib: fix PR 53425
Don't call fflush() on a read-only file pointer; it is an error on BSD
systems and causes the import of matplotlib.pyplot to fail.
To generate a diff of this commit:
cvs rdiff -u -r1.52 -r1.53 pkgsrc/graphics/py-matplotlib/Makefile
cvs rdiff -u -r1.30 -r1.31 pkgsrc/graphics/py-matplotlib/distinfo
cvs rdiff -u -r1.66 -r1.67 pkgsrc/graphics/py-matplotlib-gtk2/Makefile
cvs rdiff -u -r1.33 -r1.34 pkgsrc/graphics/py-matplotlib-tk/Makefile
cvs rdiff -u -r0 -r1.1 \
pkgsrc/graphics/py-matplotlib/patches/patch-src_file__compat.h
To generate a diff of this commit:
cvs rdiff -u -r1.52 -r1.52.2.1 pkgsrc/graphics/py-matplotlib/Makefile
cvs rdiff -u -r1.30 -r1.30.2.1 pkgsrc/graphics/py-matplotlib/distinfo
cvs rdiff -u -r1.66 -r1.66.2.1 pkgsrc/graphics/py-matplotlib-gtk2/Makefile
cvs rdiff -u -r1.33 -r1.33.2.1 pkgsrc/graphics/py-matplotlib-tk/Makefile
cvs rdiff -u -r0 -r1.1.2.2 \
pkgsrc/graphics/py-matplotlib/patches/patch-src_file__compat.h
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
State-Changed-From-To: pending-pullups->closed
State-Changed-By: maya@NetBSD.org
State-Changed-When: Sat, 22 Sep 2018 07:36:16 +0000
State-Changed-Why:
Pullup completed. THanks for the fix!
>Unformatted:
(Contact us)
$NetBSD: query-full-pr,v 1.43 2018/01/16 07:36:43 maya Exp $
$NetBSD: gnats_config.sh,v 1.9 2014/08/02 14:16:04 spz Exp $
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