NetBSD Problem Report #47588
From www@NetBSD.org Sun Feb 24 01:44:14 2013
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Date: Sun, 24 Feb 2013 01:44:13 +0000 (UTC)
From: thomas.vaughan@hpa.org.uk
Reply-To: thomas.vaughan@hpa.org.uk
To: gnats-bugs@NetBSD.org
Subject: mira-3.9.9
X-Send-Pr-Version: www-1.0
>Number: 47588
>Category: pkg
>Synopsis: mira-3.9.9
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: pkg-manager
>State: open
>Class: change-request
>Submitter-Id: net
>Arrival-Date: Sun Feb 24 01:45:00 +0000 2013
>Last-Modified: Mon Jul 13 20:08:30 +0000 2020
>Originator: Thomas Vaughan
>Release: NetBSD 6.0.1 (GENERIC) i386
>Organization:
Public Health England
>Environment:
NetBSD Temaraire 6.0.1 NetBSD 6.0.1 (GENERIC) i386
>Description:
Information for mira-3.9.9:
Comment:
Genome and EST Sequence Assembly System
Requires:
tcl-8*
{gcc47,gcc47-libs}>=4.7
{gcc47,gcc47-libs}>=4.7.0
boost-libs-1.52.*
boost-libs>=1.51.0
Description:
MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and
EST projects. MIRA assembles reads gained by
* electrophoresis sequencing (aka Sanger sequencing)
* 454 pyrosequencing (GS20, FLX or Titanium)
* Ion Torrent
* Solexa (Illumina) sequencing
* (in development) Pacific Biosciences sequencing
into contiguous sequences (called contigs). One can use the sequences of
different sequencing technologies either in a single assembly run (a true
hybrid assembly) or by mapping one type of data to an assembly of other
sequencing type (a semi-hybrid assembly (or mapping)) or by mapping a data
against consensus sequences of other assemblies (a simple mapping).
Homepage:
http://sourceforge.net/apps/mediawiki/mira-assembler
>How-To-Repeat:
(New package seems to be fully functional; pkgsrc version is 2012Q4)
>Fix:
begin 644 mira.tar.gz
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`
end
>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: pkg-manager->asau
Responsible-Changed-By: asau@NetBSD.org
Responsible-Changed-When: Sun, 24 Feb 2013 14:23:37 +0000
Responsible-Changed-Why:
I'll look at it.
Responsible-Changed-From-To: asau->pkg-manager
Responsible-Changed-By: wiz@NetBSD.org
Responsible-Changed-When: Mon, 13 Jul 2020 20:08:30 +0000
Responsible-Changed-Why:
Reset to role account
>Unformatted:
(Contact us)
$NetBSD: gnats-precook-prs,v 1.4 2018/12/21 14:20:20 maya Exp $
$NetBSD: gnats_config.sh,v 1.9 2014/08/02 14:16:04 spz Exp $
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