NetBSD Problem Report #47588

From www@NetBSD.org  Sun Feb 24 01:44:14 2013
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Date: Sun, 24 Feb 2013 01:44:13 +0000 (UTC)
From: thomas.vaughan@hpa.org.uk
Reply-To: thomas.vaughan@hpa.org.uk
To: gnats-bugs@NetBSD.org
Subject: mira-3.9.9
X-Send-Pr-Version: www-1.0

>Number:         47588
>Category:       pkg
>Synopsis:       mira-3.9.9
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    asau
>State:          open
>Class:          change-request
>Submitter-Id:   net
>Arrival-Date:   Sun Feb 24 01:45:00 +0000 2013
>Last-Modified:  Sun Feb 24 14:23:37 +0000 2013
>Originator:     Thomas Vaughan
>Release:        NetBSD 6.0.1 (GENERIC) i386
>Organization:
Public Health England
>Environment:
NetBSD Temaraire 6.0.1 NetBSD 6.0.1 (GENERIC) i386
>Description:
Information for mira-3.9.9:

Comment:
Genome and EST Sequence Assembly System

Requires:
tcl-8*
{gcc47,gcc47-libs}>=4.7
{gcc47,gcc47-libs}>=4.7.0
boost-libs-1.52.*
boost-libs>=1.51.0

Description:
MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and
EST projects. MIRA assembles reads gained by

* electrophoresis sequencing (aka Sanger sequencing)

* 454 pyrosequencing (GS20, FLX or Titanium)

* Ion Torrent

* Solexa (Illumina) sequencing

* (in development) Pacific Biosciences sequencing

into contiguous sequences (called contigs). One can use the sequences of
different sequencing technologies either in a single assembly run (a true
hybrid assembly) or by mapping one type of data to an assembly of other
sequencing type (a semi-hybrid assembly (or mapping)) or by mapping a data
against consensus sequences of other assemblies (a simple mapping).

Homepage:
http://sourceforge.net/apps/mediawiki/mira-assembler
>How-To-Repeat:
(New package seems to be fully functional; pkgsrc version is 2012Q4)
>Fix:
begin 644 mira.tar.gz
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`
end

>Release-Note:

>Audit-Trail:

Responsible-Changed-From-To: pkg-manager->asau
Responsible-Changed-By: asau@NetBSD.org
Responsible-Changed-When: Sun, 24 Feb 2013 14:23:37 +0000
Responsible-Changed-Why:
I'll look at it.


>Unformatted:

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