NetBSD Problem Report #51428
From www@NetBSD.org Fri Aug 19 20:47:37 2016
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for <gnats-bugs@gnats.NetBSD.org>; Fri, 19 Aug 2016 20:47:37 +0000 (UTC)
Message-Id: <20160819204735.968D07A2A8@mollari.NetBSD.org>
Date: Fri, 19 Aug 2016 20:47:35 +0000 (UTC)
From: coypu@sdf.org
Reply-To: coypu@sdf.org
To: gnats-bugs@NetBSD.org
Subject: numpy failing tests (math/py-numpy)
X-Send-Pr-Version: www-1.0
>Number: 51428
>Category: pkg
>Synopsis: numpy failing tests (math/py-numpy)
>Confidential: no
>Severity: serious
>Priority: medium
>Responsible: pkg-manager
>State: closed
>Class: sw-bug
>Submitter-Id: net
>Arrival-Date: Fri Aug 19 20:50:00 +0000 2016
>Closed-Date: Fri Aug 19 20:51:57 +0000 2016
>Last-Modified: Fri Aug 19 20:51:57 +0000 2016
>Originator: coypu
>Release: NetBSD 7.0_STABLE, pkgsrc-current
>Organization:
>Environment:
NetBSD 7.0_STABLE NetBSD 7.0_STABLE (GENERIC.201608171810Z) amd64
>Description:
Tests are failing for math/py-numpy.
to try:
cd /usr/pkgsrc/devel/py-rope && make install # test-only dependency
cd /usr/pkgsrc/math/py-numpy && make test
It fails with python3.5+gfortran and python2.7+g95.
This does not appear to be an upstream problem, but a netbsd one.
Upstream bug report: https://github.com/numpy/numpy/issues/7867
Failing tests:
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts(<ufunc 'sqrt'>, -0.5, 1j, 1, -1, True)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1889, in _check_branch_cut
assert_(np.all(np.absolute(y0[ji].imag - ym.imag*im_sign) < atol), (y0[ji], ym))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ 0.+0.70710678j]), array([ 0.+0.70710678j]))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts(<ufunc 'arcsin'>, [-2, 2], [1j, 1j], 1, -1, True)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1869, in _check_branch_cut
assert_(np.all(np.absolute(y0.imag - yp.imag) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([-1.57079633+1.3169579j, 1.57079633-1.3169579j]), array([-1.57079633+1.3169579j, 1.57079633+1.3169579j]))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts(<ufunc 'arccos'>, [-2, 2], [1j, 1j], 1, -1, True)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1869, in _check_branch_cut
assert_(np.all(np.absolute(y0.imag - yp.imag) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ 3.14159265-1.3169579j, 0.00000000+1.3169579j]), array([ 3.14159265e+00-1.3169579j, 2.56239474e-13-1.3169579j]))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts(<ufunc 'arctan'>, [-2j, 2j], [1, 1], -1, 1, True)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1868, in _check_branch_cut
assert_(np.all(np.absolute(y0.real - yp.real) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ -1.57079633e+000 -5.49306144e-001j,
1.79769313e+308 +1.79769313e+308j]), array([ 1.57079633-0.54930614j, 1.57079633+0.54930614j]))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts(<ufunc 'arcsinh'>, [-2j, 2j], [1, 1], -1, 1, True)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1868, in _check_branch_cut
assert_(np.all(np.absolute(y0.real - yp.real) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([-1.3169579-1.57079633j, 1.3169579+1.57079633j]), array([ 1.3169579-1.57079633j, 1.3169579+1.57079633j]))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts(<ufunc 'arccosh'>, [-1, 0.5], [1j, 1j], 1, -1, True)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1889, in _check_branch_cut
assert_(np.all(np.absolute(y0[ji].imag - ym.imag*im_sign) < atol), (y0[ji], ym))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ 0.00000000e+00+3.14159265j, -1.11022302e-16+1.04719755j]), array([ 0.00000000e+00+3.14159265j, -1.11022302e-16+1.04719755j]))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts(<ufunc 'arctanh'>, [-2, 2], [1j, 1j], 1, -1, True)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1868, in _check_branch_cut
assert_(np.all(np.absolute(y0.real - yp.real) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ -5.49306144e-001 -1.57079633e+000j,
1.79769313e+308 -1.79769313e+308j]), array([-0.54930614+1.57079633j, 0.54930614+1.57079633j]))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts_complex64(<ufunc 'sqrt'>, -0.5, 1j, 1, -1, True, <class 'numpy.complex64'>)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1889, in _check_branch_cut
assert_(np.all(np.absolute(y0[ji].imag - ym.imag*im_sign) < atol), (y0[ji], ym))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ 0.+0.70710677j], dtype=complex64), array([ 0.+0.70710677j], dtype=complex64))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts_complex64(<ufunc 'arcsin'>, [-2, 2], [1j, 1j], 1, -1, True, <class 'numpy.complex64'>)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1869, in _check_branch_cut
assert_(np.all(np.absolute(y0.imag - yp.imag) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([-1.57079637+1.31695783j, 1.57079637-1.31695795j], dtype=complex64), array([-1.57078254+1.31695783j, 1.57078254+1.31695783j], dtype=complex64))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts_complex64(<ufunc 'arccos'>, [-2, 2], [1j, 1j], 1, -1, True, <class 'numpy.complex64'>)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1869, in _check_branch_cut
assert_(np.all(np.absolute(y0.imag - yp.imag) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ 3.14159274-1.31695783j, 0.00000000+1.31695795j], dtype=complex64), array([ 3.14157891e+00-1.31695783j, 1.38282776e-05-1.31695783j], dtype=complex64))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts_complex64(<ufunc 'arctan'>, [-2j, 2j], [1, 1], -1, 1, True, <class 'numpy.complex64'>)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1868, in _check_branch_cut
assert_(np.all(np.absolute(y0.real - yp.real) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ -1.57079625e+00 -5.49306154e-01j, 3.40282347e+38 +3.40282347e+38j], dtype=complex64), array([ 1.57078838-0.54930615j, 1.57078838+0.54930615j], dtype=complex64))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts_complex64(<ufunc 'arcsinh'>, [-2j, 2j], [1, 1], -1, 1, True, <class 'numpy.complex64'>)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1868, in _check_branch_cut
assert_(np.all(np.absolute(y0.real - yp.real) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([-1.31695795-1.57079637j, 1.31695783+1.57079637j], dtype=complex64), array([ 1.31695783-1.57078254j, 1.31695783+1.57078254j], dtype=complex64))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts_complex64(<ufunc 'arccosh'>, [-1, 0.5], [1j, 1j], 1, -1, True, <class 'numpy.complex64'>)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1889, in _check_branch_cut
assert_(np.all(np.absolute(y0[ji].imag - ym.imag*im_sign) < atol), (y0[ji], ym))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ 0.+3.14159274j, 0.+1.04719758j], dtype=complex64), array([ 0.+3.14159274j, 0.+1.04719758j], dtype=complex64))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_branch_cuts_complex64(<ufunc 'arctanh'>, [-2, 2], [1j, 1j], 1, -1, True, <class 'numpy.complex64'>)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1868, in _check_branch_cut
assert_(np.all(np.absolute(y0.real - yp.real) < atol), (y0, yp))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (array([ -5.49306154e-01 -1.57079625e+00j, 3.40282347e+38 -3.40282347e+38j], dtype=complex64), array([-0.54930615+1.57078838j, 0.54930615+1.57078838j], dtype=complex64))
======================================================================
FAIL: test_umath.TestComplexFunctions.test_loss_of_precision(<class 'numpy.complex64'>,)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1755, in check_loss_of_precision
check(x_series, 2.1*eps)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1726, in check
'arcsinh'))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (0, 9.9999997e-21, inf, 'arcsinh')
======================================================================
FAIL: test_umath.TestComplexFunctions.test_loss_of_precision(<class 'numpy.complex128'>,)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/pkg/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1755, in check_loss_of_precision
check(x_series, 2.1*eps)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 1726, in check
'arcsinh'))
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 75, in assert_
raise AssertionError(smsg)
AssertionError: (0, 1.0000000000000001e-20, inf, 'arcsinh')
======================================================================
FAIL: test_ldexp_overflow (test_umath.TestLdexp)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/core/tests/test_umath.py", line 750, in test_ldexp_overflow
assert_equal(ncu.ldexp(2., imax), np.inf)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 367, in assert_equal
raise AssertionError(msg)
AssertionError:
Items are not equal:
ACTUAL: 0.0
DESIRED: inf
======================================================================
FAIL: test_complex64_pass (test_utils.TestArrayAlmostEqualNulp)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/tests/test_utils.py", line 640, in test_complex64_pass
assert_array_almost_equal_nulp(xi, x + y*1j, nulp)
File "/home/fly/pkgsrc/math/py-numpy/work/.destdir/usr/pkg/lib/python3.5/site-packages/numpy/testing/utils.py", line 1457, in assert_array_almost_equal_nulp
raise AssertionError(msg)
AssertionError: X and Y are not equal to 5 ULP
----------------------------------------------------------------------
Ran 6125 tests in 170.300s
FAILED (KNOWNFAIL=8, SKIP=9, failures=18)
>How-To-Repeat:
>Fix:
No idea, but we should probably tackle this.
>Release-Note:
>Audit-Trail:
State-Changed-From-To: open->closed
State-Changed-By: maya@NetBSD.org
State-Changed-When: Fri, 19 Aug 2016 20:51:57 +0000
State-Changed-Why:
err, wiz just opened the same bug report.
>Unformatted:
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