NetBSD Problem Report #54712
From gson@gson.org Sat Nov 23 08:39:51 2019
Return-Path: <gson@gson.org>
Received: from mail.netbsd.org (mail.netbsd.org [199.233.217.200])
(using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits))
(Client CN "mail.NetBSD.org", Issuer "mail.NetBSD.org CA" (not verified))
by mollari.NetBSD.org (Postfix) with ESMTPS id 700D37A1B2
for <gnats-bugs@gnats.NetBSD.org>; Sat, 23 Nov 2019 08:39:51 +0000 (UTC)
Message-Id: <20191123083946.B169D253F37@guava.gson.org>
Date: Sat, 23 Nov 2019 10:39:46 +0200 (EET)
From: gson@gson.org (Andreas Gustafsson)
Reply-To: gson@gson.org (Andreas Gustafsson)
To: gnats-bugs@NetBSD.org
Subject: graphics/py-matplotlib is broken
X-Send-Pr-Version: 3.95
>Number: 54712
>Category: pkg
>Synopsis: graphics/py-matplotlib is broken
>Confidential: no
>Severity: serious
>Priority: high
>Responsible: pkg-manager
>State: closed
>Class: sw-bug
>Submitter-Id: net
>Arrival-Date: Sat Nov 23 08:40:00 +0000 2019
>Closed-Date: Thu Dec 12 15:41:43 +0000 2019
>Last-Modified: Thu Dec 12 15:41:43 +0000 2019
>Originator: Andreas Gustafsson
>Release: pkgsrc-current as of 2019-11-23
>Organization:
>Environment:
System: NetBSD 9.0_BETA
Architecture: x86_64
Machine: amd64
>Description:
After upgrading my NetBSD testbed host running 9.0_BETA/amd64 to
the current pkgsrc trunk, importing matplotlib.dates from
graphics/py-matplotlib fails with an undefined symbol:
$ python3.7 -c 'import matplotlib.dates'
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/pkg/lib/python3.7/site-packages/matplotlib/dates.py", line 159, in <module>
import matplotlib.ticker as ticker
File "/usr/pkg/lib/python3.7/site-packages/matplotlib/ticker.py", line 174, in <module>
from matplotlib import transforms as mtransforms
File "/usr/pkg/lib/python3.7/site-packages/matplotlib/transforms.py", line 43, in <module>
from matplotlib._path import (
ImportError: /usr/pkg/lib/python3.7/site-packages/matplotlib/_path.so: Undefined symbol "MPL_matplotlib_ft2font_ARRAY_API" (symnum = 140)
To rule out any local issue, I reproduced the problem using a freshly
installed NetBSD-current and equally freshly installed pkgsrc-current,
and it also failed, but with a different undefined symbol:
$ python3.7 -c 'import matplotlib.dates'
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/pkg/lib/python3.7/site-packages/matplotlib/dates.py", line 159, in <module>
import matplotlib.ticker as ticker
File "/usr/pkg/lib/python3.7/site-packages/matplotlib/ticker.py", line 174, in <module>
from matplotlib import transforms as mtransforms
File "/usr/pkg/lib/python3.7/site-packages/matplotlib/transforms.py", line 43, in <module>
from matplotlib._path import (
ImportError: /usr/pkg/lib/python3.7/site-packages/matplotlib/_path.so: Undefined symbol "MPL_matplotlib_backends__tkagg_ARRAY_API" (symnum = 27)
This issue is blocking me from generating further test reports
such as those at http://www.gson.org/netbsd/bugs/build/amd64-baremetal/.
>How-To-Repeat:
cd /usr/pkgsrc/graphics/py-matplotlib
make install
python3.7 -c 'import matplotlib.dates'
>Fix:
>Release-Note:
>Audit-Trail:
From: Andreas Gustafsson <gson@gson.org>
To: adam@NetBSD.org
Cc: gnats-bugs@netbsd.org
Subject: Re: pkg/54712: graphics/py-matplotlib is broken
Date: Sat, 30 Nov 2019 11:51:48 +0200
Hi adam,
I ran a bisection to find the commit that caused pkg/54712, and it
identified these commits:
2019.11.09.21.51.15 adam pkgsrc/devel/py-cython/Makefile 1.61
2019.11.09.21.51.15 adam pkgsrc/devel/py-cython/PLIST 1.25
2019.11.09.21.51.15 adam pkgsrc/devel/py-cython/distinfo 1.53
2019.11.09.21.51.47 adam pkgsrc/doc/CHANGES-2019 1.4842
Note that this is a build-time issue - the factor that determines
whether importing matplotlib.dates works is not the version of
py-cython installed at the time of the import attempt, but the version
of py-cython installed at the time when the py-numpy and py-matplotlib
packages are built.
--
Andreas Gustafsson, gson@gson.org
From: "Adam Ciarcinski" <adam@netbsd.org>
To: gnats-bugs@gnats.NetBSD.org
Cc:
Subject: PR/54712 CVS commit: pkgsrc/devel/py-cython
Date: Wed, 11 Dec 2019 20:20:23 +0000
Module Name: pkgsrc
Committed By: adam
Date: Wed Dec 11 20:20:23 UTC 2019
Modified Files:
pkgsrc/devel/py-cython: Makefile distinfo
Added Files:
pkgsrc/devel/py-cython/patches:
patch-Cython_Distutils_old__build__ext.py
Log Message:
Fix PR 54712; bump revision
To generate a diff of this commit:
cvs rdiff -u -r1.61 -r1.62 pkgsrc/devel/py-cython/Makefile
cvs rdiff -u -r1.53 -r1.54 pkgsrc/devel/py-cython/distinfo
cvs rdiff -u -r0 -r1.1 \
pkgsrc/devel/py-cython/patches/patch-Cython_Distutils_old__build__ext.py
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
State-Changed-From-To: open->feedback
State-Changed-By: adam@NetBSD.org
State-Changed-When: Wed, 11 Dec 2019 20:37:16 +0000
State-Changed-Why:
Please, confirm it works now.
State-Changed-From-To: feedback->closed
State-Changed-By: gson@NetBSD.org
State-Changed-When: Thu, 12 Dec 2019 15:41:43 +0000
State-Changed-Why:
Confirmed fixed - thanks you!
>Unformatted:
(Contact us)
$NetBSD: query-full-pr,v 1.45 2018/12/21 14:23:33 maya Exp $
$NetBSD: gnats_config.sh,v 1.9 2014/08/02 14:16:04 spz Exp $
Copyright © 1994-2017
The NetBSD Foundation, Inc. ALL RIGHTS RESERVED.